Search found 171 matches

by CarlZeissMicroscopy3
Tue Nov 15, 2022 4:11 pm
Forum: ZEN Core Specific Topics
Topic: Measurements with scene name or number
Replies: 2
Views: 4354

Re: Measurements with scene name or number

Hello Julien, I know how to read the measurements but not the corresponding scene. You are right, there is no way to do it as the scene index is missing in the feature list of a measurement. I tried the following and it worked in principle: After inserting the measurements use the IP-Function of OAD...
by CarlZeissMicroscopy3
Wed Oct 26, 2022 10:42 am
Forum: Image Handling
Topic: Extracting vavelength information from ZenBlue metadata
Replies: 4
Views: 457

Re: Extracting vavelength information from ZenBlue metadata

Hello Kasia, I'm no expert as far as the library czifile is concerned but there are several things that come to my mind when reading your code. First , there seems to be no line of code where you read the image. Something like image = imread('test.czi') is missing. In other words: Without reading th...
by CarlZeissMicroscopy3
Thu Oct 20, 2022 3:07 pm
Forum: Image Handling
Topic: Rotate creates series of different sizes / how to delete one series
Replies: 4
Views: 8070

Re: Rotate creates series of different sizes / how to delete one series

to get rid of some Z-stacks in the image and thus reducing its size On the processing tab of Zen choose method 'Create Image Subset'. First select the 'Input' so that the 'Parameters' will adjust accordingly. As you have a Z-Stack you can select Z-Positions and choose 'Extract Range', 'Extract Mult...
by CarlZeissMicroscopy3
Wed Oct 19, 2022 3:19 pm
Forum: ZEN Core Specific Topics
Topic: interactive measurement in loops
Replies: 7
Views: 5431

Re: interactive measurement in loops

Hello Julien, Do I understand correctly that there is no class that will initialize interactive measurements task from scratch? Yes, once it is initialized the interactive measurement stays as it is, including the measurement graphics selected. This can be easily seen as the measurement graphics are...
by CarlZeissMicroscopy3
Tue Oct 18, 2022 5:17 pm
Forum: Image Handling
Topic: Rotate creates series of different sizes / how to delete one series
Replies: 4
Views: 8070

Re: Rotate creates series of different sizes / how to delete one series

Hello Katarzyna Chwalenia, you seem to have a mid-sized image. When you rotate the image the Image-Pyramid is calculated for faster viewing. But the image pyramid just generates an image with something like 10 to 15 percent bigger size. Without knowing your image exactly my guess is that your rotati...
by CarlZeissMicroscopy3
Tue Oct 18, 2022 4:24 pm
Forum: ZEN Core Specific Topics
Topic: interactive measurement in loops
Replies: 7
Views: 5431

Re: interactive measurement in loops

Hello Julien Toquant, I also tried to find a solution and finally called the developer who programmed the Interactive Measurement, but the behavior of the Interactive Measurement task seems to be ‘as designed’ and your requirement is a ‘missing feature’. The responsible product manager has been info...
by CarlZeissMicroscopy3
Fri Oct 14, 2022 10:47 am
Forum: Image Acquisition
Topic: Updating the Live.czi file in the temp folder
Replies: 9
Views: 6282

Re: Updating the Live.czi file in the temp folder

Hello Ali Koyuncuer, please note that this is a forum for Open Application Development (OAD) and not for Zen or Microscope specific themes. Maybe this contribution helps to clarify the situation: https://forums.zeiss.com/microscopy/community/viewtopic.php?t=3018 It seems to me that this forum https:...
by CarlZeissMicroscopy3
Mon Oct 10, 2022 4:14 pm
Forum: Image Processing
Topic: Get Z co-ordinate from tiled image
Replies: 8
Views: 6672

Re: Get Z co-ordinate from tiled image

Hello Timothy Band, to clarify the situation a bit let’s consider the acquisition process itself: The microscope moves to a certain position in x,y and z to take the image. As the camera takes the image as a whole the z coordinate is valid for the whole plane of the image taken. This is the reason w...
by CarlZeissMicroscopy3
Fri Oct 07, 2022 12:29 pm
Forum: Image Acquisition
Topic: Acquire adjacent individual fields of view
Replies: 14
Views: 7238

Re: Acquire adjacent individual fields of view

Hello Adrien T'Kint, this is a big one and I would like to begin with your first code snipped. In my case exp = Zen.Acquisition.Experiments.GetByName("TestTiles.czexp") exp.ClearTileRegionsAndPositions(0) exp.AddRectangleTileRegion(0,100, 100, 200,200,0) tile_region = Zen.Acquisition.Execu...
by CarlZeissMicroscopy3
Thu Oct 06, 2022 2:38 pm
Forum: Image Processing
Topic: Get Z co-ordinate from tiled image
Replies: 8
Views: 6672

Re: Get Z co-ordinate from tiled image

Hello Timothy Band, as far as I understood your case: imageWithZ = Zen.Application.ActiveDocument imageTile = imageWithZ.CreateSubImage('M(1)|Z(1)|C(1)|S(1)') print imageTile.Metadata.FocusPositionMicron CreateSubImage('M(1)|Z(1)|C(1)|S(1)') takes M(1): the first tile image (most probably a loop usi...