Control a Zeiss Axio Imager from Python

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[Harry Carlo]

Here are the general steps to control the Zeiss Axio Imager from Python:

Install the Zeiss ZEN SDK: Visit the Zeiss website and download the ZEN SDK. Follow the installation instructions provided by Zeiss to set up the SDK on your system.

Set up the Python environment: Ensure that you have a Python environment set up on your system. You can use Anaconda or another Python distribution of your choice. Create a new Python virtual environment if desired.

Install the required Python packages: Install the necessary packages to communicate with the Zeiss Axio Imager. You will need the pyzen package, which provides a Python interface for the ZEN SDK. You can install it using pip:

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pip install pyzen
Connect to the microscope: Import the pyzen package in your Python script and create an instance of the Zen class. Use the Zen.connect() method to establish a connection with the microscope.

python
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from pyzen import Zen

# Connect to the microscope
zen = Zen()
zen.connect()
Control the microscope: Once you have a connection, you can use various methods provided by the Zen class to control the microscope. For example, you can set the microscope's objective, adjust focus, capture images, and more.

python
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# Set the objective
zen.set_objective(20) # Set the objective to 20x

# Adjust focus
zen.adjust_focus(10) # Move the focus up by 10 microns

# Capture an image
image = zen.capture_image()
image.save("image.jpg")
Refer to the Zeiss ZEN SDK documentation for more details on the available methods and their usage.

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[Brenda Gray]

Hello,

Controlling the Axio Imager M2M microscope from Python is indeed feasible. You can utilize the ZEN Blue DLL without opening the ZEN Software graphical user interface. The direct USB connection to the computer is suitable for this purpose.

For a simple Python script example demonstrating how to adjust the microscope's focus, you can refer to this link: https://a-team.global/blog/building-web-applications-express-js-vs-node-js/. The example provides insights into initiating focus changes, allowing you to streamline your control of the microscope without the need for the graphical user interface.

Regarding device selection, the Python code can be configured for automatic device recognition. However, it's advisable to ensure that the microscope device is appropriately set up beforehand. If you require further assistance, feel free to reach out for more comprehensive guidance.

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